matchMotifs

Main function to match motifs

matchMotifs

• matchMotifs
• matchMotifs,PWMatrixList,DNAStringSet-method
• matchMotifs,PWMatrixList,character-method
• matchMotifs,PWMatrixList,DNAString-method
• matchMotifs,PWMatrixList,GenomicRanges-method
• matchMotifs,PWMatrixList,RangedSummarizedExperiment-method
• matchMotifs,PWMatrixList,BSgenomeViews-method
• matchMotifs,PFMatrixList,ANY-method
• matchMotifs,PWMatrix,ANY-method
• matchMotifs,PFMatrix,ANY-method

Accessors

Accessor functions for results

motifCounts

• motifCounts
• motifCounts,SummarizedExperiment-method

motifMatches

• motifMatches
• motifMatches,SummarizedExperiment-method

motifScores

• motifScores
• motifScores,SummarizedExperiment-method

Data

Some sample motifs

example_motifs

• example_motifs