Create a DsATAC dataset from multiple input files output by 10x cellranger
DsATAC.cellranger( sampleAnnot, sampleDirPrefixCol, genome, dataDir = "", regionSets = NULL, addPeakRegions = TRUE, sampleIdCol = sampleDirPrefixCol, keepInsertionInfo = FALSE, diskDump.fragments = keepInsertionInfo )
data.frame specifying the sample annotation table
column name specifying the directory prefix for each sample in the sample annotation table
directory where the files are located
a list of GRanges objects which contain region sets over which count data will be aggregated
should a merged set of peaks be created as one of the region sets (merged, non-overlapping peaks of width=500bp from the peaks of individual samples)
column name or index in the sample annotation table containing unique sample identifiers
flag indicating whether to maintain the insertion information in the resulting object.
Keep fragment coordinates stored on disk rather than in main memory. This saves memory, but increases runtime and I/O.