fastqDirToTable

scan a directory containing fastq files and create a sample annotation table from the file names

fastqDirToTable(fqDir, tabFn = NULL, pat = "")

Arguments

fqDir

string specifying a directory with fastq files

tabFn

filename specifying the where the table should be written to. If NULL (default), the table will just be returned as data frame

pat

(optional) regular expression that fastq file names have to pass

Value

data frame of parsed annotation

Author

Fabian Mueller