getChromVarDev-DsATAC-method.Rd
Compute chromVar deviations
# S4 method for DsATAC
getChromVarDev(.object, type, motifs = "jaspar")
DsATAC
object
character string specifying the region type
either a character string (currently only "jaspar" and sets contained in chromVARmotifs
("homer", "encode", "cisbp") are supported) or an object containing PWMs
that can be used by motifmatchr::matchMotifs
(such as an PFMatrixList
or PWMatrixList
object)
Deviations object as returned by chromVAR::computeDeviations