getComparisonTable-methods

Retrieve a table describing pairwise comparisons on a DsAcc object

# S4 method for DsAcc
getComparisonTable(
  .object,
  cols = NULL,
  cols1vAll = NULL,
  compNames = NULL,
  minGroupSize = 2L,
  maxGroupCount = length(.object) - 1
)

Arguments

.object

DsAcc object

cols

column names in the sample annotation table to consider for pairwise comparisons

cols1vAll

column names in the sample annotation table to consider for 1-vs-all comparisons

compNames

vector of character strings specifying a fixed comparison names to be parsed (format "$GRP1_NAME vs $GRP1_NAME [$ANNOTATION_COLUMN]")

minGroupSize

Minimum size of a group to be used in comparison. Affects the annotation columns that will be used for comparisons.

maxGroupCount

Maximum number of groups for a column to be considered for comparison.

Value

a data.frame with comparison inforamtion containing columns for the comparison name (compName), column in the annotation table (compCol) and group names for the two groups in the comparison (grp1Name, grp2Name),

Author

Fabian Mueller