getInsertionKmerFreq-methods

compute kmer frequencies at insertion sites for each sample

# S4 method for DsATAC
getInsertionKmerFreq(
  .object,
  samples = getSamples(.object),
  k = 6,
  normGenome = FALSE
)

Arguments

.object

DsATAC object

samples

sample identifiers

k

length of the kmer

normGenome

should the result be normalized by genome-wide kmer frequencies

Value

a matrix containing kmer frequencies (one row for each kmer and one column for each sample in the dataset)

Author

Fabian Mueller