getTssEnrichmentBatch-methods

Get TSS enrichment data and plot

# S4 method for DsATAC
getTssEnrichmentBatch(
  .object,
  tssGr = NULL,
  sampleIds = getSamples(.object),
  tssW = 201L,
  flank = 2000L,
  normTailW = 200L,
  smoothW = 51L
)

Arguments

.object

DsATAC object

tssGr

GRanges object containing TSS coordinates or NULL to get default set from annotation package

sampleIds

sampleIds for which TSS enrichment should be computed

tssW

size of the core TSS window

flank

number of bases flanking each TSS that will be added on each side

normTailW

number of bases on each side whose counts will be used to normalize the data

smoothW

diameter of the window (in bp) that will be used to smooth the data

Value

a list containing TSS enrichment data

Author

Fabian Mueller