function to create de novo motifs from kmers based on deviations
assembleKmers(object, threshold = 1.5, p = 0.01, progress = TRUE)
| object | kmer chromVARDeviations object |
|---|---|
| threshold | variability threshold |
| p | p value threshold for inclusion of kmer |
| progress | show progress bar? |
list with (1) motifs: de novo motif matrices, (2) seed: seed kmer for de novo motif
function for assembling de novo kmers from kmer deviations