differentialDeviations

Function to see whether deviations differ between groups

differentialDeviations(object, groups, alternative = c("two.sided", "less",
  "greater"), parametric = TRUE)

Arguments

object

chromVARDeviations object
groups

either vector of groups or name of column in colData of object with group information
alternative

only used if there are two groups -- two.sided or one sided test
parametric

use parametric test. alternatively will use kruskal wallace

Value

data.frame with p value and adjusted p value

Examples

# NOT RUN {
# Load very small example results from computeDeviations
data(mini_dev, package = "chromVAR")
difdev <- differentialDeviations(mini_dev, "Cell_Type")
# }