plots sample similarity tsne
plotDeviationsTsne(object, tsne, var_df = NULL, sample_column = NULL, annotation_name = NULL, shiny = interactive())
| object | deviations result object |
|---|---|
| tsne | result from |
| var_df | variability result |
| sample_column | column name for sample data -- colData(object) -- to be used for coloring points |
| annotation_name | name of chromVAR annotation for coloring points |
| shiny | return shiny app? otherwise return static plots |
shiny app or plots